Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 KRT18P68-201ENST00000392293 1000 ntBASIC19.17■□□□□ 0.66
RAE1P78406 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 CYP2T3P-201ENST00000601990 817 ntBASIC19.17■□□□□ 0.66
RAE1P78406 AC069236.1-201ENST00000604339 616 ntBASIC19.17■□□□□ 0.66
RAE1P78406 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.17■□□□□ 0.66
RAE1P78406 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.17■□□□□ 0.66
RAE1P78406 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
RAE1P78406 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RAE1P78406 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.17■□□□□ 0.66
RAE1P78406 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.16■□□□□ 0.66
RAE1P78406 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
RAE1P78406 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RAE1P78406 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RAE1P78406 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.16■□□□□ 0.66
RAE1P78406 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.16■□□□□ 0.66
RAE1P78406 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.16■□□□□ 0.66
RAE1P78406 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RAE1P78406 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.16■□□□□ 0.66
RAE1P78406 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RAE1P78406 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.15■□□□□ 0.66
RAE1P78406 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RAE1P78406 AC125437.2-201ENST00000625180 2167 ntBASIC19.15■□□□□ 0.66
RAE1P78406 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.15■□□□□ 0.66
RAE1P78406 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.15■□□□□ 0.66
RAE1P78406 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.15■□□□□ 0.66
RAE1P78406 AC093787.1-201ENST00000450396 207 ntBASIC19.15■□□□□ 0.66
RAE1P78406 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.15■□□□□ 0.66
RAE1P78406 OR10C1-204ENST00000622521 1039 ntBASIC19.15■□□□□ 0.66
RAE1P78406 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RAE1P78406 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.15■□□□□ 0.66
RAE1P78406 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.15■□□□□ 0.66
RAE1P78406 AC010980.2-201ENST00000587099 1412 ntBASIC19.15■□□□□ 0.66
RAE1P78406 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.15■□□□□ 0.66
RAE1P78406 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RAE1P78406 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RAE1P78406 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.15■□□□□ 0.66
RAE1P78406 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RAE1P78406 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.14■□□□□ 0.66
RAE1P78406 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RAE1P78406 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
RAE1P78406 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.14■□□□□ 0.65
RAE1P78406 MIR935-201ENST00000401179 91 ntBASIC19.14■□□□□ 0.65
RAE1P78406 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
RAE1P78406 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.14■□□□□ 0.65
RAE1P78406 AC005181.1-201ENST00000604782 1256 ntBASIC19.14■□□□□ 0.65
RAE1P78406 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.14■□□□□ 0.65
RAE1P78406 AC080038.1-201ENST00000611274 1154 ntBASIC19.14■□□□□ 0.65
RAE1P78406 AC008694.1-202ENST00000636953 945 ntBASIC19.14■□□□□ 0.65
RAE1P78406 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.14■□□□□ 0.65
RAE1P78406 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RAE1P78406 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAE1P78406 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RAE1P78406 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.13■□□□□ 0.65
RAE1P78406 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
RAE1P78406 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.13■□□□□ 0.65
RAE1P78406 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RAE1P78406 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAE1P78406 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms