Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX3P48380 AC005181.1-201ENST00000604782 1256 ntBASIC18.91■□□□□ 0.62
RFX3P48380 FAM21FP-204ENST00000608637 956 ntBASIC18.91■□□□□ 0.62
RFX3P48380 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.91■□□□□ 0.62
RFX3P48380 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX3P48380 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.91■□□□□ 0.62
RFX3P48380 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
RFX3P48380 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX3P48380 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
RFX3P48380 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RFX3P48380 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX3P48380 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RFX3P48380 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RFX3P48380 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.9■□□□□ 0.62
RFX3P48380 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX3P48380 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.9■□□□□ 0.62
RFX3P48380 AC069236.1-201ENST00000604339 616 ntBASIC18.9■□□□□ 0.62
RFX3P48380 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 AL391422.3-201ENST00000603791 2761 ntBASIC18.9■□□□□ 0.62
RFX3P48380 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
RFX3P48380 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX3P48380 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
RFX3P48380 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RFX3P48380 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX3P48380 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
RFX3P48380 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RFX3P48380 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.89■□□□□ 0.61
RFX3P48380 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RFX3P48380 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX3P48380 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.89■□□□□ 0.61
RFX3P48380 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX3P48380 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.89■□□□□ 0.61
RFX3P48380 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RFX3P48380 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.89■□□□□ 0.61
RFX3P48380 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX3P48380 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RFX3P48380 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
RFX3P48380 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.88■□□□□ 0.61
RFX3P48380 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 MIR663A-201ENST00000385250 93 ntBASIC18.88■□□□□ 0.61
RFX3P48380 CDCA4P2-201ENST00000441182 718 ntBASIC18.88■□□□□ 0.61
RFX3P48380 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.88■□□□□ 0.61
RFX3P48380 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.88■□□□□ 0.61
RFX3P48380 MIR2861-201ENST00000636310 90 ntBASIC18.88■□□□□ 0.61
RFX3P48380 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RFX3P48380 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.88■□□□□ 0.61
RFX3P48380 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.88■□□□□ 0.61
RFX3P48380 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFX3P48380 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RFX3P48380 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.87■□□□□ 0.61
RFX3P48380 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFX3P48380 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
RFX3P48380 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFX3P48380 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.87■□□□□ 0.61
RFX3P48380 AC026185.1-201ENST00000445748 174 ntBASIC18.87■□□□□ 0.61
RFX3P48380 RARRES2P4-201ENST00000514074 484 ntBASIC18.87■□□□□ 0.61
RFX3P48380 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RFX3P48380 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
RFX3P48380 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFX3P48380 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms