Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.4■□□□□ 0.86
TNFRSF4P43489 HTR7P1-201ENST00000538670 1336 ntBASIC20.4■□□□□ 0.86
TNFRSF4P43489 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.4■□□□□ 0.86
TNFRSF4P43489 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.4■□□□□ 0.86
TNFRSF4P43489 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.4■□□□□ 0.86
TNFRSF4P43489 AF186192.3-201ENST00000583427 947 ntBASIC20.4■□□□□ 0.86
TNFRSF4P43489 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.4■□□□□ 0.86
TNFRSF4P43489 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFRSF4P43489 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.4■□□□□ 0.86
TNFRSF4P43489 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFRSF4P43489 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFRSF4P43489 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.39■□□□□ 0.86
TNFRSF4P43489 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
TNFRSF4P43489 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFRSF4P43489 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFRSF4P43489 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.85
TNFRSF4P43489 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.38■□□□□ 0.85
TNFRSF4P43489 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
TNFRSF4P43489 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TNFRSF4P43489 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TNFRSF4P43489 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 FAM210CP-201ENST00000445714 574 ntBASIC20.38■□□□□ 0.85
TNFRSF4P43489 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFRSF4P43489 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFRSF4P43489 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
TNFRSF4P43489 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFRSF4P43489 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFRSF4P43489 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFRSF4P43489 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFRSF4P43489 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFRSF4P43489 TSPY15P-201ENST00000457163 923 ntBASIC20.37■□□□□ 0.85
TNFRSF4P43489 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 AL355075.4-201ENST00000554988 638 ntBASIC20.37■□□□□ 0.85
TNFRSF4P43489 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 AC004264.1-201ENST00000608354 794 ntBASIC20.37■□□□□ 0.85
TNFRSF4P43489 AC026471.5-201ENST00000615068 467 ntBASIC20.37■□□□□ 0.85
TNFRSF4P43489 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFRSF4P43489 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.37■□□□□ 0.85
TNFRSF4P43489 KRT8P20-201ENST00000423953 1409 ntBASIC20.36■□□□□ 0.85
TNFRSF4P43489 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TNFRSF4P43489 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TNFRSF4P43489 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 PTBP1P-201ENST00000554374 1601 ntBASIC20.36■□□□□ 0.85
TNFRSF4P43489 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.36■□□□□ 0.85
TNFRSF4P43489 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.36■□□□□ 0.85
TNFRSF4P43489 AL355355.2-201ENST00000442321 338 ntBASIC20.36■□□□□ 0.85
TNFRSF4P43489 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TNFRSF4P43489 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
TNFRSF4P43489 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFRSF4P43489 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TNFRSF4P43489 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TNFRSF4P43489 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TNFRSF4P43489 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TNFRSF4P43489 AC087499.1-201ENST00000418141 1075 ntBASIC20.35■□□□□ 0.85
TNFRSF4P43489 CD177P1-201ENST00000606252 935 ntBASIC20.35■□□□□ 0.85
TNFRSF4P43489 AL031963.3-201ENST00000606441 850 ntBASIC20.35■□□□□ 0.85
TNFRSF4P43489 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TNFRSF4P43489 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
TNFRSF4P43489 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TNFRSF4P43489 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.34■□□□□ 0.85
TNFRSF4P43489 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 162.2 ms