Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 EEF1DP3-203ENST00000566025 782 ntBASIC19.22■□□□□ 0.67
MSX2P35548 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.22■□□□□ 0.67
MSX2P35548 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.22■□□□□ 0.67
MSX2P35548 MIR2861-201ENST00000636310 90 ntBASIC19.22■□□□□ 0.67
MSX2P35548 AC093503.3-201ENST00000624917 2352 ntBASIC19.22■□□□□ 0.67
MSX2P35548 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.22■□□□□ 0.67
MSX2P35548 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX2P35548 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MSX2P35548 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MSX2P35548 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
MSX2P35548 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.21■□□□□ 0.67
MSX2P35548 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
MSX2P35548 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
MSX2P35548 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.21■□□□□ 0.67
MSX2P35548 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
MSX2P35548 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.21■□□□□ 0.67
MSX2P35548 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.21■□□□□ 0.67
MSX2P35548 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 MIR4767-201ENST00000582827 78 ntBASIC19.21■□□□□ 0.67
MSX2P35548 AC053503.5-201ENST00000601508 636 ntBASIC19.21■□□□□ 0.67
MSX2P35548 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.21■□□□□ 0.67
MSX2P35548 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
MSX2P35548 AC105233.4-201ENST00000642045 216 ntBASIC19.21■□□□□ 0.67
MSX2P35548 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
MSX2P35548 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX2P35548 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.2■□□□□ 0.66
MSX2P35548 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.2■□□□□ 0.66
MSX2P35548 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MSX2P35548 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.2■□□□□ 0.66
MSX2P35548 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 IGHV3-19-201ENST00000521488 291 ntBASIC19.2■□□□□ 0.66
MSX2P35548 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.2■□□□□ 0.66
MSX2P35548 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 AC233992.3-201ENST00000607491 485 ntBASIC19.2■□□□□ 0.66
MSX2P35548 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MSX2P35548 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.2■□□□□ 0.66
MSX2P35548 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
MSX2P35548 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 AC026471.1-201ENST00000564629 3026 ntBASIC19.2■□□□□ 0.66
MSX2P35548 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MSX2P35548 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
MSX2P35548 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSX2P35548 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MSX2P35548 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
MSX2P35548 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.19■□□□□ 0.66
MSX2P35548 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 TREX1-205ENST00000625293 1783 ntBASIC19.19■□□□□ 0.66
MSX2P35548 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.19■□□□□ 0.66
MSX2P35548 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.19■□□□□ 0.66
MSX2P35548 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.19■□□□□ 0.66
MSX2P35548 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
MSX2P35548 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.19■□□□□ 0.66
MSX2P35548 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.19■□□□□ 0.66
MSX2P35548 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
MSX2P35548 RARRES2P11-201ENST00000635158 484 ntBASIC19.19■□□□□ 0.66
MSX2P35548 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSX2P35548 AC020763.4-201ENST00000623414 4170 ntBASIC19.18■□□□□ 0.66
MSX2P35548 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
MSX2P35548 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.18■□□□□ 0.66
MSX2P35548 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
MSX2P35548 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
MSX2P35548 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms