Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.07■□□□□ 0.32
USF1P22415 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
USF1P22415 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
USF1P22415 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
USF1P22415 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
USF1P22415 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.06■□□□□ 0.32
USF1P22415 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
USF1P22415 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
USF1P22415 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.06■□□□□ 0.32
USF1P22415 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.06■□□□□ 0.32
USF1P22415 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USF1P22415 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
USF1P22415 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.06■□□□□ 0.32
USF1P22415 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF1P22415 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.05■□□□□ 0.32
USF1P22415 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.05■□□□□ 0.32
USF1P22415 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.05■□□□□ 0.32
USF1P22415 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF1P22415 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.05■□□□□ 0.32
USF1P22415 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.05■□□□□ 0.32
USF1P22415 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.05■□□□□ 0.32
USF1P22415 Z99916.2-201ENST00000604037 246 ntBASIC17.05■□□□□ 0.32
USF1P22415 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF1P22415 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF1P22415 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
USF1P22415 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.05■□□□□ 0.32
USF1P22415 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USF1P22415 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF1P22415 AC087633.2-202ENST00000565166 1439 ntBASIC17.04■□□□□ 0.32
USF1P22415 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.04■□□□□ 0.32
USF1P22415 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.04■□□□□ 0.32
USF1P22415 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.04■□□□□ 0.32
USF1P22415 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF1P22415 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
USF1P22415 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
USF1P22415 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
USF1P22415 FEM1AP4-201ENST00000443167 1987 ntBASIC17.03■□□□□ 0.32
USF1P22415 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.03■□□□□ 0.32
USF1P22415 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.03■□□□□ 0.32
USF1P22415 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 SNORA78-201ENST00000459373 127 ntBASIC17.03■□□□□ 0.32
USF1P22415 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.03■□□□□ 0.32
USF1P22415 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.03■□□□□ 0.32
USF1P22415 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.03■□□□□ 0.32
USF1P22415 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.03■□□□□ 0.32
USF1P22415 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.03■□□□□ 0.32
USF1P22415 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms