Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SSX4O60224 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SSX4O60224 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX4O60224 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX4O60224 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.21■□□□□ 0.51
SSX4O60224 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SSX4O60224 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.21■□□□□ 0.51
SSX4O60224 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.21■□□□□ 0.51
SSX4O60224 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.21■□□□□ 0.51
SSX4O60224 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.21■□□□□ 0.51
SSX4O60224 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.21■□□□□ 0.51
SSX4O60224 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.21■□□□□ 0.51
SSX4O60224 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.21■□□□□ 0.51
SSX4O60224 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX4O60224 PLK5-205ENST00000642079 1969 ntBASIC18.21■□□□□ 0.5
SSX4O60224 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
SSX4O60224 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX4O60224 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
SSX4O60224 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.2■□□□□ 0.5
SSX4O60224 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 NCF1B-203ENST00000435988 1254 ntBASIC18.2■□□□□ 0.5
SSX4O60224 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.2■□□□□ 0.5
SSX4O60224 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX4O60224 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX4O60224 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SSX4O60224 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SSX4O60224 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
SSX4O60224 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
SSX4O60224 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX4O60224 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX4O60224 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SSX4O60224 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.19■□□□□ 0.5
SSX4O60224 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.19■□□□□ 0.5
SSX4O60224 GPX1P1-201ENST00000388829 606 ntBASIC18.19■□□□□ 0.5
SSX4O60224 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SSX4O60224 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.19■□□□□ 0.5
SSX4O60224 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SSX4O60224 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SSX4O60224 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX4O60224 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.18■□□□□ 0.5
SSX4O60224 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SSX4O60224 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SSX4O60224 MFSD11-216ENST00000590393 1141 ntBASIC18.18■□□□□ 0.5
SSX4O60224 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX4O60224 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.18■□□□□ 0.5
SSX4O60224 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
SSX4O60224 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms