Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 POU5F1P3-201ENST00000428824 1078 ntBASIC21.19■□□□□ 0.98
USP3Q9Y6I4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 AC005829.2-201ENST00000571422 1056 ntBASIC21.19■□□□□ 0.98
USP3Q9Y6I4 AC008403.3-201ENST00000598924 454 ntBASIC21.19■□□□□ 0.98
USP3Q9Y6I4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 AC023632.3-201ENST00000521633 145 ntBASIC21.18■□□□□ 0.98
USP3Q9Y6I4 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 PTBP1P-201ENST00000554374 1601 ntBASIC21.18■□□□□ 0.98
USP3Q9Y6I4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.18■□□□□ 0.98
USP3Q9Y6I4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 AC026366.1-201ENST00000488803 879 ntBASIC21.17■□□□□ 0.98
USP3Q9Y6I4 UNC93B4-201ENST00000505679 747 ntBASIC21.17■□□□□ 0.98
USP3Q9Y6I4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP3Q9Y6I4 LINC01006-201ENST00000333319 2292 ntBASIC21.16■□□□□ 0.98
USP3Q9Y6I4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 ESRRAP1-201ENST00000400596 1257 ntBASIC21.16■□□□□ 0.98
USP3Q9Y6I4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.16■□□□□ 0.98
USP3Q9Y6I4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 AP003097.1-201ENST00000530657 1135 ntBASIC21.16■□□□□ 0.98
USP3Q9Y6I4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP3Q9Y6I4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 GABARAPL3-202ENST00000624044 1851 ntBASIC21.15■□□□□ 0.98
USP3Q9Y6I4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms