Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
ZNF560Q96MR9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 ITM2C-210ENST00000620962 501 ntBASIC21.65■■□□□ 1.06
ZNF560Q96MR9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF560Q96MR9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.64■■□□□ 1.06
ZNF560Q96MR9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.64■■□□□ 1.06
ZNF560Q96MR9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF560Q96MR9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF560Q96MR9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF560Q96MR9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
ZNF560Q96MR9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 KRT18P29-201ENST00000397031 1267 ntBASIC21.63■■□□□ 1.05
ZNF560Q96MR9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 AC008403.3-201ENST00000598924 454 ntBASIC21.63■■□□□ 1.05
ZNF560Q96MR9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 TMEM191A-211ENST00000637163 1067 ntBASIC21.63■■□□□ 1.05
ZNF560Q96MR9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF560Q96MR9 AC092720.2-201ENST00000602388 1665 ntBASIC21.63■■□□□ 1.05
ZNF560Q96MR9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 AC006058.3-201ENST00000606217 1069 ntBASIC21.62■■□□□ 1.05
ZNF560Q96MR9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 AL137060.1-201ENST00000618151 2648 ntBASIC21.62■■□□□ 1.05
ZNF560Q96MR9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
ZNF560Q96MR9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.61■■□□□ 1.05
ZNF560Q96MR9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 AC008687.6-201ENST00000596318 630 ntBASIC21.61■■□□□ 1.05
ZNF560Q96MR9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
ZNF560Q96MR9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms