Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 ECEL1P1-201ENST00000373592 1742 ntBASIC20.34■□□□□ 0.85
HMGB4Q8WW32 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB4Q8WW32 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 AC087499.1-201ENST00000418141 1075 ntBASIC20.33■□□□□ 0.85
HMGB4Q8WW32 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 AL355075.4-201ENST00000554988 638 ntBASIC20.33■□□□□ 0.85
HMGB4Q8WW32 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.33■□□□□ 0.85
HMGB4Q8WW32 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB4Q8WW32 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.33■□□□□ 0.84
HMGB4Q8WW32 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB4Q8WW32 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
HMGB4Q8WW32 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 AC124283.5-201ENST00000624661 1809 ntBASIC20.32■□□□□ 0.84
HMGB4Q8WW32 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 AC010331.1-201ENST00000611423 582 ntBASIC20.32■□□□□ 0.84
HMGB4Q8WW32 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.32■□□□□ 0.84
HMGB4Q8WW32 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB4Q8WW32 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.3■□□□□ 0.84
HMGB4Q8WW32 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB4Q8WW32 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB4Q8WW32 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms