Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPAS3Q8IXF0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 AC023632.3-201ENST00000521633 145 ntBASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.02■□□□□ 0.96
NPAS3Q8IXF0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
NPAS3Q8IXF0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPAS3Q8IXF0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
NPAS3Q8IXF0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPAS3Q8IXF0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 AC097493.4-201ENST00000641197 219 ntBASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPAS3Q8IXF0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 AC124283.5-201ENST00000624661 1809 ntBASIC21■□□□□ 0.95
NPAS3Q8IXF0 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 AC012306.2-201ENST00000609350 630 ntBASIC21■□□□□ 0.95
NPAS3Q8IXF0 AC026471.5-201ENST00000615068 467 ntBASIC21■□□□□ 0.95
NPAS3Q8IXF0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21■□□□□ 0.95
NPAS3Q8IXF0 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPAS3Q8IXF0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 AC027702.1-201ENST00000563810 1770 ntBASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.99■□□□□ 0.95
NPAS3Q8IXF0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 AF186192.3-201ENST00000583427 947 ntBASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms