Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC24.77■■□□□ 1.56
USP48Q86UV5 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
USP48Q86UV5 TK2-213ENST00000563369 882 ntTSL 5 BASIC24.77■■□□□ 1.56
USP48Q86UV5 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC24.77■■□□□ 1.56
USP48Q86UV5 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC24.77■■□□□ 1.56
USP48Q86UV5 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USP48Q86UV5 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.77■■□□□ 1.56
USP48Q86UV5 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP48Q86UV5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP48Q86UV5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP48Q86UV5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC24.76■■□□□ 1.55
USP48Q86UV5 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC24.76■■□□□ 1.55
USP48Q86UV5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
USP48Q86UV5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.76■■□□□ 1.55
USP48Q86UV5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.76■■□□□ 1.55
USP48Q86UV5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC24.76■■□□□ 1.55
USP48Q86UV5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.76■■□□□ 1.55
USP48Q86UV5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP48Q86UV5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USP48Q86UV5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USP48Q86UV5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
USP48Q86UV5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.75■■□□□ 1.55
USP48Q86UV5 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC24.75■■□□□ 1.55
USP48Q86UV5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC24.75■■□□□ 1.55
USP48Q86UV5 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC24.75■■□□□ 1.55
USP48Q86UV5 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC24.75■■□□□ 1.55
USP48Q86UV5 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC24.75■■□□□ 1.55
USP48Q86UV5 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC24.75■■□□□ 1.55
USP48Q86UV5 MTDHP1-201ENST00000605323 784 ntBASIC24.75■■□□□ 1.55
USP48Q86UV5 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
USP48Q86UV5 AL023875.1-201ENST00000640777 796 ntBASIC24.75■■□□□ 1.55
USP48Q86UV5 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.75■■□□□ 1.55
USP48Q86UV5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USP48Q86UV5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC24.74■■□□□ 1.55
USP48Q86UV5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 HES2-205ENST00000487437 968 ntTSL 3 BASIC24.74■■□□□ 1.55
USP48Q86UV5 THEM4-205ENST00000489410 643 ntTSL 2 BASIC24.74■■□□□ 1.55
USP48Q86UV5 LY6E-205ENST00000519611 635 ntTSL 3 BASIC24.74■■□□□ 1.55
USP48Q86UV5 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
USP48Q86UV5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
USP48Q86UV5 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP48Q86UV5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC24.74■■□□□ 1.55
USP48Q86UV5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
USP48Q86UV5 PKD1P6-201ENST00000343738 4769 ntBASIC24.74■■□□□ 1.55
USP48Q86UV5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP48Q86UV5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP48Q86UV5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.73■■□□□ 1.55
USP48Q86UV5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
USP48Q86UV5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.73■■□□□ 1.55
USP48Q86UV5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.73■■□□□ 1.55
USP48Q86UV5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
USP48Q86UV5 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP48Q86UV5 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC24.73■■□□□ 1.55
USP48Q86UV5 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP48Q86UV5 AC124016.1-201ENST00000609552 612 ntBASIC24.73■■□□□ 1.55
USP48Q86UV5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC24.73■■□□□ 1.55
USP48Q86UV5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP48Q86UV5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
USP48Q86UV5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.72■■□□□ 1.55
USP48Q86UV5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC24.72■■□□□ 1.55
USP48Q86UV5 SERF2-207ENST00000409614 582 ntTSL 2 BASIC24.72■■□□□ 1.55
USP48Q86UV5 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC24.72■■□□□ 1.55
USP48Q86UV5 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC24.72■■□□□ 1.55
USP48Q86UV5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.72■■□□□ 1.55
USP48Q86UV5 DHDH-203ENST00000522614 776 ntTSL 5 BASIC24.72■■□□□ 1.55
USP48Q86UV5 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP48Q86UV5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.72■■□□□ 1.55
USP48Q86UV5 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC24.71■■□□□ 1.55
USP48Q86UV5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP48Q86UV5 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP48Q86UV5 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP48Q86UV5 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
USP48Q86UV5 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
USP48Q86UV5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC24.71■■□□□ 1.55
USP48Q86UV5 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP48Q86UV5 AL445228.2-201ENST00000605589 952 ntBASIC24.71■■□□□ 1.55
USP48Q86UV5 AP001412.1-201ENST00000608405 714 ntBASIC24.71■■□□□ 1.55
USP48Q86UV5 AC097493.4-201ENST00000641197 219 ntBASIC24.71■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms