Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LDB1Q86U70 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB1Q86U70 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
LDB1Q86U70 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB1Q86U70 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LDB1Q86U70 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.19■□□□□ 0.82
LDB1Q86U70 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
LDB1Q86U70 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LDB1Q86U70 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.19■□□□□ 0.82
LDB1Q86U70 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.19■□□□□ 0.82
LDB1Q86U70 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.19■□□□□ 0.82
LDB1Q86U70 AC005181.1-201ENST00000604782 1256 ntBASIC20.19■□□□□ 0.82
LDB1Q86U70 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LDB1Q86U70 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB1Q86U70 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.18■□□□□ 0.82
LDB1Q86U70 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.18■□□□□ 0.82
LDB1Q86U70 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.18■□□□□ 0.82
LDB1Q86U70 AFG3L1P-217ENST00000557444 2447 ntBASIC20.18■□□□□ 0.82
LDB1Q86U70 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LDB1Q86U70 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 AC093787.1-201ENST00000450396 207 ntBASIC20.18■□□□□ 0.82
LDB1Q86U70 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.18■□□□□ 0.82
LDB1Q86U70 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.18■□□□□ 0.82
LDB1Q86U70 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.18■□□□□ 0.82
LDB1Q86U70 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.18■□□□□ 0.82
LDB1Q86U70 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.18■□□□□ 0.82
LDB1Q86U70 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB1Q86U70 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
LDB1Q86U70 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
LDB1Q86U70 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.17■□□□□ 0.82
LDB1Q86U70 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.17■□□□□ 0.82
LDB1Q86U70 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LDB1Q86U70 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB1Q86U70 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB1Q86U70 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB1Q86U70 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB1Q86U70 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB1Q86U70 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB1Q86U70 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB1Q86U70 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB1Q86U70 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB1Q86U70 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB1Q86U70 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB1Q86U70 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LDB1Q86U70 AC069236.1-201ENST00000604339 616 ntBASIC20.16■□□□□ 0.82
LDB1Q86U70 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB1Q86U70 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LDB1Q86U70 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB1Q86U70 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
LDB1Q86U70 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LDB1Q86U70 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.15■□□□□ 0.82
LDB1Q86U70 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.15■□□□□ 0.82
LDB1Q86U70 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LDB1Q86U70 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LDB1Q86U70 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LDB1Q86U70 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LDB1Q86U70 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LDB1Q86U70 MCRIP2P1-201ENST00000394346 511 ntBASIC20.15■□□□□ 0.82
LDB1Q86U70 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.15■□□□□ 0.82
LDB1Q86U70 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.15■□□□□ 0.82
LDB1Q86U70 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms