Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR4651-201ENST00000582622 73 ntBASIC18.72■□□□□ 0.59
RNF4P78317 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF4P78317 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
RNF4P78317 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.71■□□□□ 0.59
RNF4P78317 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 UNC93B5-201ENST00000530315 699 ntBASIC18.71■□□□□ 0.59
RNF4P78317 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.71■□□□□ 0.59
RNF4P78317 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.71■□□□□ 0.59
RNF4P78317 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.71■□□□□ 0.59
RNF4P78317 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.71■□□□□ 0.59
RNF4P78317 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF4P78317 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RNF4P78317 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.7■□□□□ 0.58
RNF4P78317 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
RNF4P78317 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
RNF4P78317 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF4P78317 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
RNF4P78317 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF4P78317 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF4P78317 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.69■□□□□ 0.58
RNF4P78317 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF4P78317 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.69■□□□□ 0.58
RNF4P78317 TSPY20P-201ENST00000450910 630 ntBASIC18.69■□□□□ 0.58
RNF4P78317 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 AC092720.2-201ENST00000602388 1665 ntBASIC18.69■□□□□ 0.58
RNF4P78317 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
RNF4P78317 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF4P78317 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RNF4P78317 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF4P78317 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF4P78317 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF4P78317 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.68■□□□□ 0.58
RNF4P78317 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
RNF4P78317 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
RNF4P78317 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF4P78317 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms