Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SOX3P41225 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX3P41225 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.97■□□□□ 0.63
SOX3P41225 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.97■□□□□ 0.63
SOX3P41225 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX3P41225 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX3P41225 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.97■□□□□ 0.63
SOX3P41225 AC092118.2-201ENST00000613495 667 ntBASIC18.97■□□□□ 0.63
SOX3P41225 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SOX3P41225 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SOX3P41225 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX3P41225 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.96■□□□□ 0.63
SOX3P41225 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SOX3P41225 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.96■□□□□ 0.63
SOX3P41225 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SOX3P41225 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 AC073210.2-201ENST00000430369 194 ntBASIC18.96■□□□□ 0.63
SOX3P41225 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.96■□□□□ 0.63
SOX3P41225 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SOX3P41225 AC100791.3-201ENST00000617619 330 ntBASIC18.96■□□□□ 0.63
SOX3P41225 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.96■□□□□ 0.63
SOX3P41225 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SOX3P41225 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SOX3P41225 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.95■□□□□ 0.62
SOX3P41225 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
SOX3P41225 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SOX3P41225 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.95■□□□□ 0.62
SOX3P41225 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.95■□□□□ 0.62
SOX3P41225 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 MCRIP2P1-201ENST00000394346 511 ntBASIC18.95■□□□□ 0.62
SOX3P41225 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.95■□□□□ 0.62
SOX3P41225 CYP2T3P-201ENST00000601990 817 ntBASIC18.95■□□□□ 0.62
SOX3P41225 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.95■□□□□ 0.62
SOX3P41225 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.95■□□□□ 0.62
SOX3P41225 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SOX3P41225 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.94■□□□□ 0.62
SOX3P41225 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.94■□□□□ 0.62
SOX3P41225 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.94■□□□□ 0.62
SOX3P41225 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.94■□□□□ 0.62
SOX3P41225 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SOX3P41225 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.94■□□□□ 0.62
SOX3P41225 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
SOX3P41225 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 KRT17P1-201ENST00000399211 1546 ntBASIC18.94■□□□□ 0.62
SOX3P41225 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SOX3P41225 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.94■□□□□ 0.62
SOX3P41225 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.93■□□□□ 0.62
SOX3P41225 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SOX3P41225 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 AFG3L1P-217ENST00000557444 2447 ntBASIC18.93■□□□□ 0.62
SOX3P41225 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SOX3P41225 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX3P41225 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX3P41225 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.93■□□□□ 0.62
SOX3P41225 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SOX3P41225 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms