Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 AL355802.2-201ENST00000402069 882 ntBASIC20.12■□□□□ 0.81
MSH3P20585 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH3P20585 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.12■□□□□ 0.81
MSH3P20585 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.12■□□□□ 0.81
MSH3P20585 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.12■□□□□ 0.81
MSH3P20585 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
MSH3P20585 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH3P20585 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH3P20585 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH3P20585 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH3P20585 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH3P20585 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
MSH3P20585 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.11■□□□□ 0.81
MSH3P20585 AL138781.1-201ENST00000566567 1274 ntBASIC20.11■□□□□ 0.81
MSH3P20585 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MSH3P20585 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH3P20585 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
MSH3P20585 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH3P20585 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH3P20585 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH3P20585 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.1■□□□□ 0.81
MSH3P20585 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH3P20585 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.1■□□□□ 0.81
MSH3P20585 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
MSH3P20585 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
MSH3P20585 AC092118.2-201ENST00000613495 667 ntBASIC20.1■□□□□ 0.81
MSH3P20585 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH3P20585 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH3P20585 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH3P20585 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH3P20585 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
MSH3P20585 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH3P20585 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH3P20585 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.09■□□□□ 0.81
MSH3P20585 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.09■□□□□ 0.81
MSH3P20585 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 GABARAPL3-202ENST00000624044 1851 ntBASIC20.09■□□□□ 0.81
MSH3P20585 LINC01006-201ENST00000333319 2292 ntBASIC20.09■□□□□ 0.81
MSH3P20585 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH3P20585 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.08■□□□□ 0.81
MSH3P20585 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.08■□□□□ 0.81
MSH3P20585 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
MSH3P20585 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH3P20585 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
MSH3P20585 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
MSH3P20585 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH3P20585 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH3P20585 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH3P20585 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH3P20585 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH3P20585 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH3P20585 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH3P20585 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH3P20585 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
MSH3P20585 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH3P20585 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
MSH3P20585 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH3P20585 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MSH3P20585 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MSH3P20585 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH3P20585 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.07■□□□□ 0.8
MSH3P20585 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.07■□□□□ 0.8
MSH3P20585 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH3P20585 AC142086.2-201ENST00000569753 217 ntBASIC20.07■□□□□ 0.8
MSH3P20585 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH3P20585 AC133041.1-202ENST00000642053 222 ntBASIC20.07■□□□□ 0.8
MSH3P20585 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
MSH3P20585 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms