Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
HMGB1P09429 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.89■■□□□ 1.41
HMGB1P09429 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
HMGB1P09429 AL589743.5-201ENST00000616611 1050 ntBASIC23.89■■□□□ 1.41
HMGB1P09429 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB1P09429 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB1P09429 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB1P09429 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB1P09429 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB1P09429 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
HMGB1P09429 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.89■■□□□ 1.41
HMGB1P09429 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB1P09429 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
HMGB1P09429 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGB1P09429 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGB1P09429 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
HMGB1P09429 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.88■■□□□ 1.41
HMGB1P09429 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 AC093787.1-201ENST00000450396 207 ntBASIC23.88■■□□□ 1.41
HMGB1P09429 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.88■■□□□ 1.41
HMGB1P09429 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGB1P09429 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB1P09429 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.87■■□□□ 1.41
HMGB1P09429 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
HMGB1P09429 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
HMGB1P09429 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
HMGB1P09429 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
HMGB1P09429 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
HMGB1P09429 AL355472.2-201ENST00000422958 438 ntBASIC23.87■■□□□ 1.41
HMGB1P09429 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.87■■□□□ 1.41
HMGB1P09429 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.87■■□□□ 1.41
HMGB1P09429 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.87■■□□□ 1.41
HMGB1P09429 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
HMGB1P09429 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.87■■□□□ 1.41
HMGB1P09429 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGB1P09429 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
HMGB1P09429 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.86■■□□□ 1.41
HMGB1P09429 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.86■■□□□ 1.41
HMGB1P09429 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGB1P09429 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGB1P09429 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
HMGB1P09429 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB1P09429 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
HMGB1P09429 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGB1P09429 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.85■■□□□ 1.41
HMGB1P09429 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGB1P09429 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGB1P09429 AF201337.1-201ENST00000520239 748 ntBASIC23.85■■□□□ 1.41
HMGB1P09429 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.85■■□□□ 1.41
HMGB1P09429 AL050303.2-201ENST00000619798 666 ntBASIC23.85■■□□□ 1.41
HMGB1P09429 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGB1P09429 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.84■■□□□ 1.41
HMGB1P09429 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
HMGB1P09429 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGB1P09429 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.84■■□□□ 1.41
HMGB1P09429 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.84■■□□□ 1.41
HMGB1P09429 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGB1P09429 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGB1P09429 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.84■■□□□ 1.41
HMGB1P09429 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
HMGB1P09429 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.84■■□□□ 1.41
HMGB1P09429 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.84■■□□□ 1.41
HMGB1P09429 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB1P09429 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
HMGB1P09429 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGB1P09429 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB1P09429 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB1P09429 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGB1P09429 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
HMGB1P09429 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB1P09429 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB1P09429 MIR663A-201ENST00000385250 93 ntBASIC23.83■■□□□ 1.41
HMGB1P09429 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB1P09429 CROCCP5-201ENST00000436658 830 ntBASIC23.83■■□□□ 1.41
HMGB1P09429 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGB1P09429 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGB1P09429 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms