Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HMGB3O15347 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB3O15347 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB3O15347 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB3O15347 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB3O15347 AC241377.3-202ENST00000626088 1088 ntBASIC16.27■□□□□ 0.2
HMGB3O15347 AC241585.3-202ENST00000628937 1088 ntBASIC16.27■□□□□ 0.2
HMGB3O15347 AC245100.8-202ENST00000629247 1058 ntBASIC16.27■□□□□ 0.2
HMGB3O15347 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB3O15347 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGB3O15347 AL162377.1-201ENST00000618844 1793 ntBASIC16.27■□□□□ 0.2
HMGB3O15347 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGB3O15347 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.27■□□□□ 0.19
HMGB3O15347 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
HMGB3O15347 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
HMGB3O15347 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HMGB3O15347 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB3O15347 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGB3O15347 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
HMGB3O15347 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
HMGB3O15347 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HMGB3O15347 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 AL033527.3-201ENST00000566366 1196 ntBASIC16.26■□□□□ 0.19
HMGB3O15347 EXOG-217ENST00000630638 197 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGB3O15347 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGB3O15347 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HMGB3O15347 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB3O15347 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGB3O15347 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
HMGB3O15347 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB3O15347 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB3O15347 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB3O15347 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB3O15347 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB3O15347 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HMGB3O15347 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.25■□□□□ 0.19
HMGB3O15347 AC018445.3-201ENST00000624177 1945 ntBASIC16.25■□□□□ 0.19
HMGB3O15347 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB3O15347 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HMGB3O15347 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB3O15347 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB3O15347 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 AC010997.5-201ENST00000609182 354 ntBASIC16.24■□□□□ 0.19
HMGB3O15347 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
HMGB3O15347 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB3O15347 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HMGB3O15347 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB3O15347 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB3O15347 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB3O15347 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
HMGB3O15347 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB3O15347 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB3O15347 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB3O15347 TSPY9P-201ENST00000440215 945 ntBASIC16.23■□□□□ 0.19
HMGB3O15347 TSPY11P-201ENST00000442607 1045 ntBASIC16.23■□□□□ 0.19
HMGB3O15347 RNF146-205ENST00000477776 762 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB3O15347 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB3O15347 KRT125P-201ENST00000546827 989 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms