Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 AC105020.6-201ENST00000621523 1217 ntBASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KCMF1Q9P0J7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 AL589743.5-201ENST00000616611 1050 ntBASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 AC020907.5-201ENST00000624372 1936 ntBASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KCMF1Q9P0J7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KCMF1Q9P0J7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 AC092720.2-201ENST00000602388 1665 ntBASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 AC073130.3-201ENST00000624389 2278 ntBASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 SLC29A4P1-201ENST00000398760 971 ntBASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 GABARAPL3-202ENST00000624044 1851 ntBASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KCMF1Q9P0J7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 LSM12P1-201ENST00000411836 588 ntBASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KCMF1Q9P0J7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 AC092667.1-201ENST00000434301 2586 ntBASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 LINC01006-201ENST00000333319 2292 ntBASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.15■□□□□ 0.66
KCMF1Q9P0J7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms