Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 POM121L13P-201ENST00000422362 380 ntBASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 UBE2SP1-201ENST00000450587 669 ntBASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRAIPQ9BWF2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 Z98882.1-201ENST00000622160 2253 ntBASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
TRAIPQ9BWF2 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 AC069544.1-201ENST00000609399 999 ntBASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRAIPQ9BWF2 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 RPPH1-201ENST00000516869 333 ntBASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 AC005829.2-201ENST00000571422 1056 ntBASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.17■■□□□ 1.14
TRAIPQ9BWF2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAIPQ9BWF2 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 AC233263.1-201ENST00000578059 224 ntBASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAIPQ9BWF2 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms