Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 SNORA78-201ENST00000459373 127 ntBASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 AC073314.1-201ENST00000568729 2216 ntBASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
SH3RF1Q7Z6J0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 GABARAPL3-202ENST00000624044 1851 ntBASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 KRT16P2-201ENST00000414673 1423 ntBASIC23.25■■□□□ 1.31
SH3RF1Q7Z6J0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 AC060766.5-201ENST00000590539 871 ntBASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 AC243732.1-201ENST00000612648 864 ntBASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 AC092667.1-201ENST00000434301 2586 ntBASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 AC007225.1-201ENST00000566331 1836 ntBASIC23.24■■□□□ 1.31
SH3RF1Q7Z6J0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 CYP2T3P-201ENST00000601990 817 ntBASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 AC011484.1-201ENST00000377652 1995 ntBASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
SH3RF1Q7Z6J0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 AC233263.1-201ENST00000578059 224 ntBASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 SPIB-206ENST00000596074 847 ntTSL 2 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
SH3RF1Q7Z6J0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SH3RF1Q7Z6J0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms