Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 AC092720.2-201ENST00000602388 1665 ntBASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD3Q3KNS1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 AC069152.1-201ENST00000438030 544 ntBASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 CD99P1-205ENST00000527459 561 ntBASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 OR10C1-204ENST00000622521 1039 ntBASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.79■□□□□ 0.76
PTCHD3Q3KNS1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD3Q3KNS1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 KRT8P36-201ENST00000489121 1440 ntBASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 MIPEPP3-201ENST00000412105 444 ntBASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 RARRES2P4-201ENST00000514074 484 ntBASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 CYP21A1P-202ENST00000354927 1481 ntBASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD3Q3KNS1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.77■□□□□ 0.75
PTCHD3Q3KNS1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
PTCHD3Q3KNS1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 AL512408.1-201ENST00000569378 2000 ntBASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 AC133041.1-202ENST00000642053 222 ntBASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms