Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.17■□□□□ 0.98
LIG3P49916 AC011767.1-201ENST00000617410 1153 ntBASIC21.17■□□□□ 0.98
LIG3P49916 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.17■□□□□ 0.98
LIG3P49916 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 SMG8-203ENST00000578922 2178 ntBASIC21.17■□□□□ 0.98
LIG3P49916 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.16■□□□□ 0.98
LIG3P49916 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LIG3P49916 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LIG3P49916 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.16■□□□□ 0.98
LIG3P49916 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
LIG3P49916 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.16■□□□□ 0.98
LIG3P49916 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.16■□□□□ 0.98
LIG3P49916 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.16■□□□□ 0.98
LIG3P49916 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIG3P49916 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.15■□□□□ 0.98
LIG3P49916 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.15■□□□□ 0.98
LIG3P49916 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.15■□□□□ 0.98
LIG3P49916 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.15■□□□□ 0.98
LIG3P49916 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
LIG3P49916 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.15■□□□□ 0.98
LIG3P49916 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIG3P49916 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.15■□□□□ 0.98
LIG3P49916 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.14■□□□□ 0.98
LIG3P49916 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LIG3P49916 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIG3P49916 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.14■□□□□ 0.98
LIG3P49916 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIG3P49916 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIG3P49916 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LIG3P49916 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIG3P49916 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.14■□□□□ 0.97
LIG3P49916 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.14■□□□□ 0.97
LIG3P49916 KRT18P20-201ENST00000548986 1279 ntBASIC21.14■□□□□ 0.97
LIG3P49916 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.14■□□□□ 0.97
LIG3P49916 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.14■□□□□ 0.97
LIG3P49916 AC073111.5-205ENST00000641717 521 ntBASIC21.14■□□□□ 0.97
LIG3P49916 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIG3P49916 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LIG3P49916 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.14■□□□□ 0.97
LIG3P49916 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIG3P49916 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LIG3P49916 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LIG3P49916 AP005212.1-201ENST00000581547 1997 ntBASIC21.14■□□□□ 0.97
LIG3P49916 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
LIG3P49916 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LIG3P49916 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.13■□□□□ 0.97
LIG3P49916 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 CDCA4P2-201ENST00000441182 718 ntBASIC21.13■□□□□ 0.97
LIG3P49916 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.13■□□□□ 0.97
LIG3P49916 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.13■□□□□ 0.97
LIG3P49916 MFSD11-216ENST00000590393 1141 ntBASIC21.13■□□□□ 0.97
LIG3P49916 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.13■□□□□ 0.97
LIG3P49916 MYCNOS-205ENST00000641950 531 ntBASIC21.13■□□□□ 0.97
LIG3P49916 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.13■□□□□ 0.97
LIG3P49916 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
LIG3P49916 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIG3P49916 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms