Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX1P47902 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.44■□□□□ 0.22
CDX1P47902 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDX1P47902 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX1P47902 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX1P47902 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX1P47902 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX1P47902 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX1P47902 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX1P47902 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX1P47902 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX1P47902 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX1P47902 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.43■□□□□ 0.22
CDX1P47902 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX1P47902 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.42■□□□□ 0.22
CDX1P47902 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDX1P47902 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 Z98882.1-201ENST00000622160 2253 ntBASIC16.42■□□□□ 0.22
CDX1P47902 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.42■□□□□ 0.22
CDX1P47902 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 RNF146-206ENST00000480444 843 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 AC073111.5-205ENST00000641717 521 ntBASIC16.42■□□□□ 0.22
CDX1P47902 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX1P47902 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX1P47902 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX1P47902 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX1P47902 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDX1P47902 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX1P47902 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDX1P47902 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC16.41■□□□□ 0.22
CDX1P47902 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDX1P47902 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX1P47902 CDCA4P2-201ENST00000441182 718 ntBASIC16.41■□□□□ 0.22
CDX1P47902 AC026185.1-201ENST00000445748 174 ntBASIC16.41■□□□□ 0.22
CDX1P47902 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.41■□□□□ 0.22
CDX1P47902 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.41■□□□□ 0.22
CDX1P47902 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX1P47902 SLC7A5P1-201ENST00000568957 537 ntBASIC16.41■□□□□ 0.22
CDX1P47902 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.41■□□□□ 0.22
CDX1P47902 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.41■□□□□ 0.22
CDX1P47902 UBE2DNL-204ENST00000602536 740 ntBASIC16.41■□□□□ 0.22
CDX1P47902 AC008175.2-201ENST00000612840 297 ntBASIC16.41■□□□□ 0.22
CDX1P47902 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 AC120498.10-201ENST00000621827 505 ntBASIC16.41■□□□□ 0.22
CDX1P47902 MYCNOS-205ENST00000641950 531 ntBASIC16.41■□□□□ 0.22
CDX1P47902 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms