Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DPB1P04440 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DPB1P04440 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HLA-DPB1P04440 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 AC092720.2-201ENST00000602388 1665 ntBASIC18.15■□□□□ 0.5
HLA-DPB1P04440 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 YBX1P1-201ENST00000445822 960 ntBASIC18.15■□□□□ 0.5
HLA-DPB1P04440 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DPB1P04440 LINC02228-203ENST00000641970 1355 ntBASIC18.15■□□□□ 0.5
HLA-DPB1P04440 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
HLA-DPB1P04440 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HLA-DPB1P04440 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HLA-DPB1P04440 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.14■□□□□ 0.49
HLA-DPB1P04440 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DPB1P04440 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 AC098818.2-201ENST00000564925 2320 ntBASIC18.13■□□□□ 0.49
HLA-DPB1P04440 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DPB1P04440 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 AC123595.1-201ENST00000440769 1046 ntBASIC18.12■□□□□ 0.49
HLA-DPB1P04440 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
HLA-DPB1P04440 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms