Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.81■■□□□ 1.24
MSH4O15457 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
MSH4O15457 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
MSH4O15457 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH4O15457 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH4O15457 ABHD17AP1-201ENST00000358206 933 ntBASIC22.8■■□□□ 1.24
MSH4O15457 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH4O15457 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.8■■□□□ 1.24
MSH4O15457 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.8■■□□□ 1.24
MSH4O15457 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH4O15457 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.8■■□□□ 1.24
MSH4O15457 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH4O15457 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH4O15457 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH4O15457 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH4O15457 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH4O15457 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH4O15457 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH4O15457 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
MSH4O15457 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
MSH4O15457 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.79■■□□□ 1.24
MSH4O15457 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 AC092720.2-201ENST00000602388 1665 ntBASIC22.79■■□□□ 1.24
MSH4O15457 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.79■■□□□ 1.24
MSH4O15457 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC22.79■■□□□ 1.24
MSH4O15457 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC22.79■■□□□ 1.24
MSH4O15457 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC22.79■■□□□ 1.24
MSH4O15457 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
MSH4O15457 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC22.79■■□□□ 1.24
MSH4O15457 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH4O15457 PTBP1P-201ENST00000554374 1601 ntBASIC22.79■■□□□ 1.24
MSH4O15457 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
MSH4O15457 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.78■■□□□ 1.24
MSH4O15457 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC22.78■■□□□ 1.24
MSH4O15457 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.78■■□□□ 1.24
MSH4O15457 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.78■■□□□ 1.24
MSH4O15457 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.78■■□□□ 1.24
MSH4O15457 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.78■■□□□ 1.24
MSH4O15457 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH4O15457 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.77■■□□□ 1.24
MSH4O15457 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC22.77■■□□□ 1.24
MSH4O15457 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.77■■□□□ 1.24
MSH4O15457 REXO2-208ENST00000539754 791 ntTSL 2 BASIC22.77■■□□□ 1.24
MSH4O15457 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 AC008403.3-201ENST00000598924 454 ntBASIC22.77■■□□□ 1.24
MSH4O15457 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC22.77■■□□□ 1.24
MSH4O15457 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH4O15457 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
MSH4O15457 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH4O15457 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH4O15457 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH4O15457 AC005829.2-201ENST00000571422 1056 ntBASIC22.76■■□□□ 1.23
MSH4O15457 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH4O15457 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
MSH4O15457 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH4O15457 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms