Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 POM121L13P-201ENST00000422362 380 ntBASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 AC233263.1-201ENST00000578059 224 ntBASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 AL390719.1-204ENST00000412397 1219 ntBASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 AL359736.2-201ENST00000621992 437 ntBASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 AC006557.6-201ENST00000623071 864 ntBASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV40A0A0B4J280 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.52■□□□□ 0.23
TRAV40A0A0B4J280 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAV40A0A0B4J280 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.52■□□□□ 0.23
TRAV40A0A0B4J280 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAV40A0A0B4J280 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAV40A0A0B4J280 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 AC027702.1-201ENST00000563810 1770 ntBASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV40A0A0B4J280 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 AC121338.2-201ENST00000622535 1744 ntBASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms