Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CLCF1Q9UBD9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.1■□□□□ 0.49
CLCF1Q9UBD9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLCF1Q9UBD9 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLCF1Q9UBD9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.1■□□□□ 0.49
CLCF1Q9UBD9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLCF1Q9UBD9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.09■□□□□ 0.49
CLCF1Q9UBD9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CLCF1Q9UBD9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 GCSHP5-201ENST00000443090 522 ntBASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CLCF1Q9UBD9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 AC005829.2-201ENST00000571422 1056 ntBASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCF1Q9UBD9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 RPS2P52-201ENST00000469610 820 ntBASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 AF106564.1-201ENST00000607058 2553 ntBASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCF1Q9UBD9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCF1Q9UBD9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms