Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 AC098818.2-201ENST00000564925 2320 ntBASIC20.06■□□□□ 0.8
MKS1Q9NXB0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 AC005332.7-201ENST00000614046 2005 ntBASIC20.06■□□□□ 0.8
MKS1Q9NXB0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MKS1Q9NXB0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 IRS3P-201ENST00000223076 1006 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 AC091799.1-201ENST00000422823 811 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L2-201ENST00000561772 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L6-201ENST00000626483 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L1-201ENST00000627662 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L8-201ENST00000629013 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L3-201ENST00000630187 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L7-201ENST00000630678 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DUX4L5-201ENST00000630834 1275 ntBASIC20.05■□□□□ 0.8
MKS1Q9NXB0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.05■□□□□ 0.8
MKS1Q9NXB0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
MKS1Q9NXB0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.03■□□□□ 0.8
MKS1Q9NXB0 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.02■□□□□ 0.8
MKS1Q9NXB0 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 AC007322.3-201ENST00000426526 701 ntBASIC20.02■□□□□ 0.8
MKS1Q9NXB0 SLC7A5P2-201ENST00000553010 536 ntBASIC20.02■□□□□ 0.8
MKS1Q9NXB0 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms