Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC25.99■■□□□ 1.75
USP42Q9H9J4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC25.99■■□□□ 1.75
USP42Q9H9J4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP42Q9H9J4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP42Q9H9J4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP42Q9H9J4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP42Q9H9J4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
USP42Q9H9J4 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.97■■□□□ 1.75
USP42Q9H9J4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC25.97■■□□□ 1.75
USP42Q9H9J4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
USP42Q9H9J4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.97■■□□□ 1.75
USP42Q9H9J4 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.97■■□□□ 1.75
USP42Q9H9J4 PRKY-204ENST00000533551 1019 ntBASIC25.97■■□□□ 1.75
USP42Q9H9J4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.97■■□□□ 1.75
USP42Q9H9J4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP42Q9H9J4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC25.97■■□□□ 1.75
USP42Q9H9J4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP42Q9H9J4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP42Q9H9J4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP42Q9H9J4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USP42Q9H9J4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 TK2-213ENST00000563369 882 ntTSL 5 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP42Q9H9J4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
USP42Q9H9J4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USP42Q9H9J4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
USP42Q9H9J4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC25.95■■□□□ 1.75
USP42Q9H9J4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.95■■□□□ 1.75
USP42Q9H9J4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.95■■□□□ 1.75
USP42Q9H9J4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC25.95■■□□□ 1.75
USP42Q9H9J4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.75
USP42Q9H9J4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC25.95■■□□□ 1.74
USP42Q9H9J4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC25.95■■□□□ 1.74
USP42Q9H9J4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USP42Q9H9J4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC25.95■■□□□ 1.74
USP42Q9H9J4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USP42Q9H9J4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
USP42Q9H9J4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USP42Q9H9J4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USP42Q9H9J4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
USP42Q9H9J4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP42Q9H9J4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP42Q9H9J4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP42Q9H9J4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP42Q9H9J4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC25.94■■□□□ 1.74
USP42Q9H9J4 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC25.93■■□□□ 1.74
USP42Q9H9J4 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP42Q9H9J4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms