Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 SMG8-203ENST00000578922 2178 ntBASIC19.34■□□□□ 0.69
PIF1Q9H611 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PIF1Q9H611 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PIF1Q9H611 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.34■□□□□ 0.69
PIF1Q9H611 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.33■□□□□ 0.69
PIF1Q9H611 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
PIF1Q9H611 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PIF1Q9H611 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
PIF1Q9H611 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PIF1Q9H611 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
PIF1Q9H611 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PIF1Q9H611 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.33■□□□□ 0.68
PIF1Q9H611 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.33■□□□□ 0.68
PIF1Q9H611 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PIF1Q9H611 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PIF1Q9H611 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.33■□□□□ 0.68
PIF1Q9H611 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PIF1Q9H611 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.33■□□□□ 0.68
PIF1Q9H611 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
PIF1Q9H611 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PIF1Q9H611 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
PIF1Q9H611 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 MIR572-201ENST00000384983 95 ntBASIC19.32■□□□□ 0.68
PIF1Q9H611 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.32■□□□□ 0.68
PIF1Q9H611 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.32■□□□□ 0.68
PIF1Q9H611 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.32■□□□□ 0.68
PIF1Q9H611 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PIF1Q9H611 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
PIF1Q9H611 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.31■□□□□ 0.68
PIF1Q9H611 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 AC116562.4-201ENST00000641316 2276 ntBASIC19.31■□□□□ 0.68
PIF1Q9H611 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.31■□□□□ 0.68
PIF1Q9H611 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.31■□□□□ 0.68
PIF1Q9H611 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PIF1Q9H611 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PIF1Q9H611 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 AL158211.5-201ENST00000623583 2518 ntBASIC19.3■□□□□ 0.68
PIF1Q9H611 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
PIF1Q9H611 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PIF1Q9H611 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
PIF1Q9H611 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.3■□□□□ 0.68
PIF1Q9H611 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PIF1Q9H611 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
PIF1Q9H611 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PIF1Q9H611 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.29■□□□□ 0.68
PIF1Q9H611 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PIF1Q9H611 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.29■□□□□ 0.68
PIF1Q9H611 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.29■□□□□ 0.68
PIF1Q9H611 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.29■□□□□ 0.68
PIF1Q9H611 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
PIF1Q9H611 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.29■□□□□ 0.68
PIF1Q9H611 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PIF1Q9H611 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms