Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIME1Q9H400 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIME1Q9H400 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
LIME1Q9H400 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
LIME1Q9H400 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LIME1Q9H400 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIME1Q9H400 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LIME1Q9H400 AC091799.1-201ENST00000422823 811 ntBASIC17.83■□□□□ 0.44
LIME1Q9H400 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.83■□□□□ 0.44
LIME1Q9H400 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.83■□□□□ 0.44
LIME1Q9H400 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LIME1Q9H400 AC092368.3-202ENST00000574180 1591 ntBASIC17.83■□□□□ 0.44
LIME1Q9H400 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LIME1Q9H400 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.82■□□□□ 0.44
LIME1Q9H400 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.82■□□□□ 0.44
LIME1Q9H400 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
LIME1Q9H400 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIME1Q9H400 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.82■□□□□ 0.44
LIME1Q9H400 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.81■□□□□ 0.44
LIME1Q9H400 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
LIME1Q9H400 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.81■□□□□ 0.44
LIME1Q9H400 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LIME1Q9H400 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIME1Q9H400 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.81■□□□□ 0.44
LIME1Q9H400 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.81■□□□□ 0.44
LIME1Q9H400 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
LIME1Q9H400 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIME1Q9H400 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.8■□□□□ 0.44
LIME1Q9H400 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.8■□□□□ 0.44
LIME1Q9H400 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIME1Q9H400 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.8■□□□□ 0.44
LIME1Q9H400 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIME1Q9H400 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LIME1Q9H400 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.79■□□□□ 0.44
LIME1Q9H400 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIME1Q9H400 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.79■□□□□ 0.44
LIME1Q9H400 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIME1Q9H400 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.79■□□□□ 0.44
LIME1Q9H400 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.79■□□□□ 0.44
LIME1Q9H400 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 SOX15-203ENST00000570788 1093 ntBASIC17.79■□□□□ 0.44
LIME1Q9H400 FAM21FP-204ENST00000608637 956 ntBASIC17.79■□□□□ 0.44
LIME1Q9H400 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIME1Q9H400 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
LIME1Q9H400 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms