Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 FAM201B-201ENST00000458407 597 ntBASIC21.74■■□□□ 1.07
ZNF560Q96MR9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF560Q96MR9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 POU5F1P3-201ENST00000428824 1078 ntBASIC21.73■■□□□ 1.07
ZNF560Q96MR9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 AC007225.1-201ENST00000566331 1836 ntBASIC21.73■■□□□ 1.07
ZNF560Q96MR9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF560Q96MR9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 AP003097.1-201ENST00000530657 1135 ntBASIC21.72■■□□□ 1.07
ZNF560Q96MR9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF560Q96MR9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 AL121603.2-201ENST00000557373 2117 ntBASIC21.71■■□□□ 1.07
ZNF560Q96MR9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.71■■□□□ 1.07
ZNF560Q96MR9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF560Q96MR9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 ESRRAP1-201ENST00000400596 1257 ntBASIC21.7■■□□□ 1.06
ZNF560Q96MR9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 AC026366.1-201ENST00000488803 879 ntBASIC21.7■■□□□ 1.06
ZNF560Q96MR9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF560Q96MR9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms