Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 KRT18P20-201ENST00000548986 1279 ntBASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 AC019069.1-201ENST00000610008 1333 ntBASIC21.04■□□□□ 0.96
ATG4AQ8WYN0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4AQ8WYN0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 AC243732.1-201ENST00000612648 864 ntBASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4AQ8WYN0 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.02■□□□□ 0.95
ATG4AQ8WYN0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ATG4AQ8WYN0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ATG4AQ8WYN0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 AC007322.3-201ENST00000426526 701 ntBASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
ATG4AQ8WYN0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 AC125437.2-201ENST00000625180 2167 ntBASIC21■□□□□ 0.95
ATG4AQ8WYN0 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 DPP3P2-201ENST00000416030 1696 ntBASIC21■□□□□ 0.95
ATG4AQ8WYN0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATG4AQ8WYN0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATG4AQ8WYN0 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4AQ8WYN0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4AQ8WYN0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 KRT8P36-201ENST00000489121 1440 ntBASIC21■□□□□ 0.95
ATG4AQ8WYN0 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4AQ8WYN0 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
ATG4AQ8WYN0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.99■□□□□ 0.95
ATG4AQ8WYN0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms