Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USHBP1Q8N6Y0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 AC244015.2-201ENST00000616358 1861 ntBASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 EP400NL-214ENST00000641289 2402 ntBASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 Z98882.1-201ENST00000622160 2253 ntBASIC26.92■■□□□ 1.9
USHBP1Q8N6Y0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 Six3os1_6.1-201ENST00000620790 196 ntBASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.91■■□□□ 1.9
USHBP1Q8N6Y0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC26.9■■□□□ 1.9
USHBP1Q8N6Y0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 PENK-204ENST00000518770 863 ntTSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 PRKY-204ENST00000533551 1019 ntBASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC26.89■■□□□ 1.9
USHBP1Q8N6Y0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 AL024507.2-201ENST00000606070 2574 ntBASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 AC027702.1-201ENST00000563810 1770 ntBASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
USHBP1Q8N6Y0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 AL355075.4-201ENST00000554988 638 ntBASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC26.88■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms