Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.97■■□□□ 1.11
KRT39Q6A163 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
KRT39Q6A163 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.97■■□□□ 1.11
KRT39Q6A163 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT39Q6A163 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT39Q6A163 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.96■■□□□ 1.11
KRT39Q6A163 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.96■■□□□ 1.11
KRT39Q6A163 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
KRT39Q6A163 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
KRT39Q6A163 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.96■■□□□ 1.11
KRT39Q6A163 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT39Q6A163 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
KRT39Q6A163 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
KRT39Q6A163 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.95■■□□□ 1.11
KRT39Q6A163 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.95■■□□□ 1.1
KRT39Q6A163 AL355472.2-201ENST00000422958 438 ntBASIC21.95■■□□□ 1.1
KRT39Q6A163 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.95■■□□□ 1.1
KRT39Q6A163 AF201337.1-201ENST00000520239 748 ntBASIC21.95■■□□□ 1.1
KRT39Q6A163 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
KRT39Q6A163 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.95■■□□□ 1.1
KRT39Q6A163 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT39Q6A163 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
KRT39Q6A163 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 AC006970.2-201ENST00000450065 779 ntBASIC21.94■■□□□ 1.1
KRT39Q6A163 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.94■■□□□ 1.1
KRT39Q6A163 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 AC105020.6-201ENST00000621523 1217 ntBASIC21.94■■□□□ 1.1
KRT39Q6A163 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT39Q6A163 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT39Q6A163 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.93■■□□□ 1.1
KRT39Q6A163 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
KRT39Q6A163 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.93■■□□□ 1.1
KRT39Q6A163 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.93■■□□□ 1.1
KRT39Q6A163 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.93■■□□□ 1.1
KRT39Q6A163 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.93■■□□□ 1.1
KRT39Q6A163 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 AC105036.2-201ENST00000569468 176 ntBASIC21.93■■□□□ 1.1
KRT39Q6A163 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.93■■□□□ 1.1
KRT39Q6A163 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.93■■□□□ 1.1
KRT39Q6A163 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT39Q6A163 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 AL512408.1-201ENST00000569378 2000 ntBASIC21.92■■□□□ 1.1
KRT39Q6A163 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.92■■□□□ 1.1
KRT39Q6A163 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.92■■□□□ 1.1
KRT39Q6A163 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.92■■□□□ 1.1
KRT39Q6A163 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
KRT39Q6A163 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.92■■□□□ 1.1
KRT39Q6A163 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
KRT39Q6A163 AL162377.1-201ENST00000618844 1793 ntBASIC21.92■■□□□ 1.1
KRT39Q6A163 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.91■■□□□ 1.1
KRT39Q6A163 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
KRT39Q6A163 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
KRT39Q6A163 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms