Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP39Q53GS9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.65■□□□□ 0.9
USP39Q53GS9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.65■□□□□ 0.9
USP39Q53GS9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP39Q53GS9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.65■□□□□ 0.9
USP39Q53GS9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP39Q53GS9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.65■□□□□ 0.9
USP39Q53GS9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
USP39Q53GS9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP39Q53GS9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
USP39Q53GS9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP39Q53GS9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.64■□□□□ 0.9
USP39Q53GS9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP39Q53GS9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP39Q53GS9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.64■□□□□ 0.89
USP39Q53GS9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.64■□□□□ 0.89
USP39Q53GS9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
USP39Q53GS9 LINC01023-201ENST00000606054 436 ntBASIC20.64■□□□□ 0.89
USP39Q53GS9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.64■□□□□ 0.89
USP39Q53GS9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.64■□□□□ 0.89
USP39Q53GS9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.64■□□□□ 0.89
USP39Q53GS9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.64■□□□□ 0.89
USP39Q53GS9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP39Q53GS9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.64■□□□□ 0.89
USP39Q53GS9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.63■□□□□ 0.89
USP39Q53GS9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.63■□□□□ 0.89
USP39Q53GS9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.63■□□□□ 0.89
USP39Q53GS9 KRT17P2-201ENST00000300992 1314 ntBASIC20.63■□□□□ 0.89
USP39Q53GS9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.63■□□□□ 0.89
USP39Q53GS9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.63■□□□□ 0.89
USP39Q53GS9 FAM210CP-201ENST00000445714 574 ntBASIC20.63■□□□□ 0.89
USP39Q53GS9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
USP39Q53GS9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.63■□□□□ 0.89
USP39Q53GS9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.63■□□□□ 0.89
USP39Q53GS9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP39Q53GS9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP39Q53GS9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP39Q53GS9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP39Q53GS9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 MIR1224-201ENST00000408193 85 ntBASIC20.62■□□□□ 0.89
USP39Q53GS9 AC012618.2-201ENST00000428058 849 ntBASIC20.62■□□□□ 0.89
USP39Q53GS9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.62■□□□□ 0.89
USP39Q53GS9 C2orf69P4-201ENST00000565394 541 ntBASIC20.62■□□□□ 0.89
USP39Q53GS9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.62■□□□□ 0.89
USP39Q53GS9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.62■□□□□ 0.89
USP39Q53GS9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP39Q53GS9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 AC026471.6-201ENST00000622954 1905 ntBASIC20.62■□□□□ 0.89
USP39Q53GS9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.62■□□□□ 0.89
USP39Q53GS9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP39Q53GS9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP39Q53GS9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.61■□□□□ 0.89
USP39Q53GS9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 AP001412.1-201ENST00000608405 714 ntBASIC20.61■□□□□ 0.89
USP39Q53GS9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP39Q53GS9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.61■□□□□ 0.89
USP39Q53GS9 AC116050.2-201ENST00000612102 1779 ntBASIC20.61■□□□□ 0.89
USP39Q53GS9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 292.9 ms