Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
HMGCS2P54868 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC23.6■■□□□ 1.37
HMGCS2P54868 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.6■■□□□ 1.37
HMGCS2P54868 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC23.6■■□□□ 1.37
HMGCS2P54868 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGCS2P54868 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGCS2P54868 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGCS2P54868 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC23.59■■□□□ 1.37
HMGCS2P54868 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGCS2P54868 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC23.59■■□□□ 1.37
HMGCS2P54868 KRT18P21-201ENST00000515767 1272 ntBASIC23.59■■□□□ 1.37
HMGCS2P54868 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC23.59■■□□□ 1.37
HMGCS2P54868 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGCS2P54868 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC23.59■■□□□ 1.37
HMGCS2P54868 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGCS2P54868 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
HMGCS2P54868 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
HMGCS2P54868 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.59■■□□□ 1.37
HMGCS2P54868 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGCS2P54868 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGCS2P54868 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGCS2P54868 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
HMGCS2P54868 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGCS2P54868 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.58■■□□□ 1.37
HMGCS2P54868 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGCS2P54868 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.58■■□□□ 1.37
HMGCS2P54868 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
HMGCS2P54868 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
HMGCS2P54868 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
HMGCS2P54868 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGCS2P54868 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HMGCS2P54868 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
HMGCS2P54868 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HMGCS2P54868 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.58■■□□□ 1.37
HMGCS2P54868 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC23.58■■□□□ 1.37
HMGCS2P54868 AL355075.4-201ENST00000554988 638 ntBASIC23.58■■□□□ 1.37
HMGCS2P54868 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC23.58■■□□□ 1.37
HMGCS2P54868 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.58■■□□□ 1.37
HMGCS2P54868 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
HMGCS2P54868 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
HMGCS2P54868 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.57■■□□□ 1.36
HMGCS2P54868 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
HMGCS2P54868 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.57■■□□□ 1.36
HMGCS2P54868 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC124283.5-201ENST00000624661 1809 ntBASIC23.57■■□□□ 1.36
HMGCS2P54868 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.57■■□□□ 1.36
HMGCS2P54868 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC087499.1-201ENST00000418141 1075 ntBASIC23.57■■□□□ 1.36
HMGCS2P54868 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC23.57■■□□□ 1.36
HMGCS2P54868 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC23.57■■□□□ 1.36
HMGCS2P54868 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC23.57■■□□□ 1.36
HMGCS2P54868 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
HMGCS2P54868 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 AC133561.5-201ENST00000635547 218 ntBASIC23.57■■□□□ 1.36
HMGCS2P54868 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGCS2P54868 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
HMGCS2P54868 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
HMGCS2P54868 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC23.56■■□□□ 1.36
HMGCS2P54868 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGCS2P54868 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGCS2P54868 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC23.56■■□□□ 1.36
HMGCS2P54868 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.56■■□□□ 1.36
HMGCS2P54868 Six3os1_6.1-201ENST00000620790 196 ntBASIC23.56■■□□□ 1.36
HMGCS2P54868 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.56■■□□□ 1.36
HMGCS2P54868 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.55■■□□□ 1.36
HMGCS2P54868 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.55■■□□□ 1.36
HMGCS2P54868 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
HMGCS2P54868 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HMGCS2P54868 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms