Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.19■□□□□ 0.34
USF1P22415 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.19■□□□□ 0.34
USF1P22415 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.19■□□□□ 0.34
USF1P22415 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.19■□□□□ 0.34
USF1P22415 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.19■□□□□ 0.34
USF1P22415 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.19■□□□□ 0.34
USF1P22415 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.19■□□□□ 0.34
USF1P22415 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.18■□□□□ 0.34
USF1P22415 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.18■□□□□ 0.34
USF1P22415 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.18■□□□□ 0.34
USF1P22415 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.18■□□□□ 0.34
USF1P22415 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 RPPH1-201ENST00000516869 333 ntBASIC17.18■□□□□ 0.34
USF1P22415 C1QBPP2-201ENST00000528754 825 ntBASIC17.18■□□□□ 0.34
USF1P22415 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.18■□□□□ 0.34
USF1P22415 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.18■□□□□ 0.34
USF1P22415 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
USF1P22415 AC026310.3-201ENST00000625186 2373 ntBASIC17.18■□□□□ 0.34
USF1P22415 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
USF1P22415 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USF1P22415 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
USF1P22415 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.18■□□□□ 0.34
USF1P22415 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.17■□□□□ 0.34
USF1P22415 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.17■□□□□ 0.34
USF1P22415 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.17■□□□□ 0.34
USF1P22415 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.17■□□□□ 0.34
USF1P22415 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.17■□□□□ 0.34
USF1P22415 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.17■□□□□ 0.34
USF1P22415 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.17■□□□□ 0.34
USF1P22415 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.17■□□□□ 0.34
USF1P22415 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
USF1P22415 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
USF1P22415 CYP21A1P-202ENST00000354927 1481 ntBASIC17.17■□□□□ 0.34
USF1P22415 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
USF1P22415 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USF1P22415 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.16■□□□□ 0.34
USF1P22415 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
USF1P22415 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.16■□□□□ 0.34
USF1P22415 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.16■□□□□ 0.34
USF1P22415 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.16■□□□□ 0.34
USF1P22415 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 SOX15-203ENST00000570788 1093 ntBASIC17.16■□□□□ 0.34
USF1P22415 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
USF1P22415 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.16■□□□□ 0.34
USF1P22415 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
USF1P22415 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.16■□□□□ 0.34
USF1P22415 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.16■□□□□ 0.34
USF1P22415 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USF1P22415 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
USF1P22415 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
USF1P22415 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.15■□□□□ 0.34
USF1P22415 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.15■□□□□ 0.34
USF1P22415 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms