Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC008694.1-202ENST00000636953 945 ntBASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
AP4E1Q9UPM8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 RAP2CP1-201ENST00000605103 478 ntBASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
AP4E1Q9UPM8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 MCRIP2P1-201ENST00000394346 511 ntBASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 AC026185.1-201ENST00000445748 174 ntBASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 AL356652.1-201ENST00000615962 565 ntBASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 AC100791.3-201ENST00000617619 330 ntBASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
AP4E1Q9UPM8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 AC092666.2-201ENST00000613287 246 ntBASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 OR10C1-204ENST00000622521 1039 ntBASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
AP4E1Q9UPM8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 MIR663A-201ENST00000385250 93 ntBASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 AL050303.2-201ENST00000619798 666 ntBASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.11■□□□□ 0.97
AP4E1Q9UPM8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms