Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 NTF6G-201ENST00000591094 616 ntBASIC18.16■□□□□ 0.5
VSX1Q9NZR4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.16■□□□□ 0.5
VSX1Q9NZR4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 MIR6821-201ENST00000617625 74 ntBASIC18.15■□□□□ 0.5
VSX1Q9NZR4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.15■□□□□ 0.5
VSX1Q9NZR4 KRT8P36-201ENST00000489121 1440 ntBASIC18.15■□□□□ 0.5
VSX1Q9NZR4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.14■□□□□ 0.5
VSX1Q9NZR4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
VSX1Q9NZR4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
VSX1Q9NZR4 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
VSX1Q9NZR4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
VSX1Q9NZR4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 CDV3P1-201ENST00000471403 739 ntBASIC18.14■□□□□ 0.49
VSX1Q9NZR4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX1Q9NZR4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 FAM21FP-204ENST00000608637 956 ntBASIC18.13■□□□□ 0.49
VSX1Q9NZR4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 AC099778.1-201ENST00000568593 1911 ntBASIC18.13■□□□□ 0.49
VSX1Q9NZR4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX1Q9NZR4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms