Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RTL3Q8N8U3 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RTL3Q8N8U3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RTL3Q8N8U3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
RTL3Q8N8U3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 AC092118.2-201ENST00000613495 667 ntBASIC20.89■□□□□ 0.93
RTL3Q8N8U3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RTL3Q8N8U3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 AL138781.1-201ENST00000566567 1274 ntBASIC20.88■□□□□ 0.93
RTL3Q8N8U3 AC142086.2-201ENST00000569753 217 ntBASIC20.88■□□□□ 0.93
RTL3Q8N8U3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.88■□□□□ 0.93
RTL3Q8N8U3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 MIR4758-201ENST00000577688 71 ntBASIC20.87■□□□□ 0.93
RTL3Q8N8U3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.87■□□□□ 0.93
RTL3Q8N8U3 FEM1AP1-201ENST00000431297 1995 ntBASIC20.86■□□□□ 0.93
RTL3Q8N8U3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.86■□□□□ 0.93
RTL3Q8N8U3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms