Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.05■□□□□ 0.96
PRPF39Q86UA1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 AC007322.4-201ENST00000509611 723 ntBASIC21.05■□□□□ 0.96
PRPF39Q86UA1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF39Q86UA1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF39Q86UA1 AC068338.2-201ENST00000563278 1430 ntBASIC21.04■□□□□ 0.96
PRPF39Q86UA1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 CD99P1-205ENST00000527459 561 ntBASIC21.03■□□□□ 0.96
PRPF39Q86UA1 AL138781.1-201ENST00000566567 1274 ntBASIC21.03■□□□□ 0.96
PRPF39Q86UA1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 AC008694.1-202ENST00000636953 945 ntBASIC21.03■□□□□ 0.96
PRPF39Q86UA1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 AC121338.2-201ENST00000622535 1744 ntBASIC21.03■□□□□ 0.96
PRPF39Q86UA1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 RBM17P2-201ENST00000616397 1405 ntBASIC21.03■□□□□ 0.96
PRPF39Q86UA1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 GABARAPL3-202ENST00000624044 1851 ntBASIC21.03■□□□□ 0.96
PRPF39Q86UA1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF39Q86UA1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.02■□□□□ 0.96
PRPF39Q86UA1 AC245052.3-201ENST00000450182 901 ntBASIC21.02■□□□□ 0.96
PRPF39Q86UA1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 AC133041.1-202ENST00000642053 222 ntBASIC21.02■□□□□ 0.96
PRPF39Q86UA1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF39Q86UA1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 CYP2T1P-201ENST00000432607 1285 ntBASIC21.01■□□□□ 0.95
PRPF39Q86UA1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF39Q86UA1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms