Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
FOXA1P55317 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 AC243732.1-201ENST00000612648 864 ntBASIC19.71■□□□□ 0.75
FOXA1P55317 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.71■□□□□ 0.75
FOXA1P55317 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXA1P55317 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 AC019069.1-201ENST00000610008 1333 ntBASIC19.71■□□□□ 0.75
FOXA1P55317 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA1P55317 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXA1P55317 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
FOXA1P55317 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.7■□□□□ 0.74
FOXA1P55317 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA1P55317 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.7■□□□□ 0.74
FOXA1P55317 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA1P55317 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA1P55317 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA1P55317 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
FOXA1P55317 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA1P55317 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
FOXA1P55317 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA1P55317 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA1P55317 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXA1P55317 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.69■□□□□ 0.74
FOXA1P55317 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXA1P55317 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA1P55317 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXA1P55317 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 KRT8P36-201ENST00000489121 1440 ntBASIC19.68■□□□□ 0.74
FOXA1P55317 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
FOXA1P55317 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
FOXA1P55317 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
FOXA1P55317 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 AC007322.3-201ENST00000426526 701 ntBASIC19.68■□□□□ 0.74
FOXA1P55317 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.68■□□□□ 0.74
FOXA1P55317 SLC7A5P1-201ENST00000568957 537 ntBASIC19.68■□□□□ 0.74
FOXA1P55317 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
FOXA1P55317 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.68■□□□□ 0.74
FOXA1P55317 AC125437.2-201ENST00000625180 2167 ntBASIC19.68■□□□□ 0.74
FOXA1P55317 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.68■□□□□ 0.74
FOXA1P55317 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
FOXA1P55317 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA1P55317 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms