Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.23■□□□□ 0.35
USF1P22415 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
USF1P22415 AC008403.3-201ENST00000598924 454 ntBASIC17.23■□□□□ 0.35
USF1P22415 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
USF1P22415 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.23■□□□□ 0.35
USF1P22415 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.23■□□□□ 0.35
USF1P22415 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.22■□□□□ 0.35
USF1P22415 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 AC026471.6-201ENST00000622954 1905 ntBASIC17.22■□□□□ 0.35
USF1P22415 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 AC008550.1-201ENST00000511500 884 ntBASIC17.22■□□□□ 0.35
USF1P22415 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.22■□□□□ 0.35
USF1P22415 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 FAM197Y4-202ENST00000622692 608 ntBASIC17.22■□□□□ 0.35
USF1P22415 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.22■□□□□ 0.35
USF1P22415 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF1P22415 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USF1P22415 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
USF1P22415 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.21■□□□□ 0.35
USF1P22415 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.21■□□□□ 0.35
USF1P22415 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 AL359736.2-201ENST00000621992 437 ntBASIC17.21■□□□□ 0.35
USF1P22415 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.21■□□□□ 0.35
USF1P22415 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USF1P22415 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USF1P22415 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.21■□□□□ 0.35
USF1P22415 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.21■□□□□ 0.34
USF1P22415 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.21■□□□□ 0.34
USF1P22415 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.2■□□□□ 0.34
USF1P22415 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.2■□□□□ 0.34
USF1P22415 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
USF1P22415 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.2■□□□□ 0.34
USF1P22415 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 SLC25A24-204ENST00000569674 2357 ntBASIC17.2■□□□□ 0.34
USF1P22415 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.2■□□□□ 0.34
USF1P22415 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.2■□□□□ 0.34
USF1P22415 MIR718-201ENST00000390190 70 ntBASIC17.2■□□□□ 0.34
USF1P22415 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
USF1P22415 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
USF1P22415 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.2■□□□□ 0.34
USF1P22415 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.2■□□□□ 0.34
USF1P22415 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.2■□□□□ 0.34
USF1P22415 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.2■□□□□ 0.34
USF1P22415 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USF1P22415 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
USF1P22415 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.19■□□□□ 0.34
USF1P22415 AC138932.1-201ENST00000534164 6830 ntBASIC17.19■□□□□ 0.34
USF1P22415 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
USF1P22415 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms