Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LIN28AP1-201ENST00000429574 405 ntBASIC21.1■□□□□ 0.97
COL9A1P20849 AC022616.7-201ENST00000525383 220 ntBASIC21.1■□□□□ 0.97
COL9A1P20849 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL9A1P20849 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.1■□□□□ 0.97
COL9A1P20849 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.1■□□□□ 0.97
COL9A1P20849 AC027702.1-201ENST00000563810 1770 ntBASIC21.1■□□□□ 0.97
COL9A1P20849 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
COL9A1P20849 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL9A1P20849 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.09■□□□□ 0.97
COL9A1P20849 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 UNC93B2-201ENST00000285383 730 ntBASIC21.09■□□□□ 0.97
COL9A1P20849 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL9A1P20849 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL9A1P20849 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.09■□□□□ 0.97
COL9A1P20849 AC010203.1-204ENST00000548782 407 ntBASIC21.09■□□□□ 0.97
COL9A1P20849 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.09■□□□□ 0.97
COL9A1P20849 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.09■□□□□ 0.97
COL9A1P20849 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.09■□□□□ 0.97
COL9A1P20849 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL9A1P20849 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL9A1P20849 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL9A1P20849 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.09■□□□□ 0.97
COL9A1P20849 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL9A1P20849 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL9A1P20849 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL9A1P20849 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.08■□□□□ 0.97
COL9A1P20849 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL9A1P20849 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL9A1P20849 HCG4P8-203ENST00000443049 980 ntBASIC21.08■□□□□ 0.97
COL9A1P20849 ATP5G1P1-201ENST00000448724 379 ntBASIC21.08■□□□□ 0.97
COL9A1P20849 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.08■□□□□ 0.97
COL9A1P20849 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.08■□□□□ 0.97
COL9A1P20849 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.08■□□□□ 0.97
COL9A1P20849 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.08■□□□□ 0.97
COL9A1P20849 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.08■□□□□ 0.97
COL9A1P20849 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.08■□□□□ 0.97
COL9A1P20849 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL9A1P20849 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.08■□□□□ 0.96
COL9A1P20849 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL9A1P20849 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
COL9A1P20849 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL9A1P20849 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL9A1P20849 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.08■□□□□ 0.96
COL9A1P20849 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
COL9A1P20849 CYP2D8P-201ENST00000433633 1490 ntBASIC21.07■□□□□ 0.96
COL9A1P20849 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.07■□□□□ 0.96
COL9A1P20849 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL9A1P20849 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL9A1P20849 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL9A1P20849 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.07■□□□□ 0.96
COL9A1P20849 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL9A1P20849 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL9A1P20849 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL9A1P20849 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.07■□□□□ 0.96
COL9A1P20849 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.06■□□□□ 0.96
COL9A1P20849 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
COL9A1P20849 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
COL9A1P20849 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.06■□□□□ 0.96
COL9A1P20849 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 AK4P3-201ENST00000418260 669 ntBASIC21.06■□□□□ 0.96
COL9A1P20849 FDX1P1-201ENST00000449115 551 ntBASIC21.06■□□□□ 0.96
COL9A1P20849 AC245052.3-201ENST00000450182 901 ntBASIC21.06■□□□□ 0.96
COL9A1P20849 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.06■□□□□ 0.96
COL9A1P20849 FAM21FP-204ENST00000608637 956 ntBASIC21.06■□□□□ 0.96
COL9A1P20849 FAM99A-202ENST00000538190 1989 ntBASIC21.06■□□□□ 0.96
COL9A1P20849 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.06■□□□□ 0.96
COL9A1P20849 AC068473.5-201ENST00000616428 2072 ntBASIC21.06■□□□□ 0.96
COL9A1P20849 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL9A1P20849 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.05■□□□□ 0.96
COL9A1P20849 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.05■□□□□ 0.96
COL9A1P20849 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.05■□□□□ 0.96
COL9A1P20849 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.05■□□□□ 0.96
COL9A1P20849 AC010947.1-201ENST00000623454 693 ntBASIC21.05■□□□□ 0.96
COL9A1P20849 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL9A1P20849 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL9A1P20849 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL9A1P20849 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.05■□□□□ 0.96
COL9A1P20849 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.05■□□□□ 0.96
COL9A1P20849 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
COL9A1P20849 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
COL9A1P20849 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms