Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.95■□□□□ 0.46
SGCEO43556 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.95■□□□□ 0.46
SGCEO43556 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SGCEO43556 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.95■□□□□ 0.46
SGCEO43556 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SGCEO43556 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SGCEO43556 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SGCEO43556 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SGCEO43556 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SGCEO43556 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.94■□□□□ 0.46
SGCEO43556 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.94■□□□□ 0.46
SGCEO43556 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
SGCEO43556 MFSD11-216ENST00000590393 1141 ntBASIC17.94■□□□□ 0.46
SGCEO43556 AC013268.1-206ENST00000638368 961 ntBASIC17.94■□□□□ 0.46
SGCEO43556 AC112229.1-201ENST00000639295 961 ntBASIC17.94■□□□□ 0.46
SGCEO43556 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.94■□□□□ 0.46
SGCEO43556 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SGCEO43556 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SGCEO43556 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SGCEO43556 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SGCEO43556 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SGCEO43556 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.93■□□□□ 0.46
SGCEO43556 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.93■□□□□ 0.46
SGCEO43556 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.93■□□□□ 0.46
SGCEO43556 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.93■□□□□ 0.46
SGCEO43556 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SGCEO43556 AC006015.1-201ENST00000429970 570 ntBASIC17.93■□□□□ 0.46
SGCEO43556 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.93■□□□□ 0.46
SGCEO43556 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SGCEO43556 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.93■□□□□ 0.46
SGCEO43556 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SGCEO43556 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.92■□□□□ 0.46
SGCEO43556 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.92■□□□□ 0.46
SGCEO43556 AL591742.1-201ENST00000604433 565 ntBASIC17.92■□□□□ 0.46
SGCEO43556 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.92■□□□□ 0.46
SGCEO43556 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.92■□□□□ 0.46
SGCEO43556 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.92■□□□□ 0.46
SGCEO43556 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SGCEO43556 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SGCEO43556 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.91■□□□□ 0.46
SGCEO43556 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SGCEO43556 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.91■□□□□ 0.46
SGCEO43556 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SGCEO43556 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.91■□□□□ 0.46
SGCEO43556 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.91■□□□□ 0.46
SGCEO43556 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.91■□□□□ 0.46
SGCEO43556 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.91■□□□□ 0.46
SGCEO43556 BID-214ENST00000617586 542 ntTSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SGCEO43556 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.91■□□□□ 0.46
SGCEO43556 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SGCEO43556 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms