Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
HOXC11O43248 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.82■□□□□ 0.92
HOXC11O43248 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
HOXC11O43248 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 AL596275.1-201ENST00000423464 877 ntBASIC20.82■□□□□ 0.92
HOXC11O43248 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HOXC11O43248 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC11O43248 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC11O43248 EP400NL-214ENST00000641289 2402 ntBASIC20.82■□□□□ 0.92
HOXC11O43248 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC11O43248 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC11O43248 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HOXC11O43248 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC11O43248 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC11O43248 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
HOXC11O43248 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC11O43248 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.81■□□□□ 0.92
HOXC11O43248 AC006557.6-201ENST00000623071 864 ntBASIC20.81■□□□□ 0.92
HOXC11O43248 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC11O43248 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC11O43248 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HOXC11O43248 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 KRT8P36-201ENST00000489121 1440 ntBASIC20.8■□□□□ 0.92
HOXC11O43248 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HOXC11O43248 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXC11O43248 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC11O43248 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXC11O43248 AL390719.1-204ENST00000412397 1219 ntBASIC20.8■□□□□ 0.92
HOXC11O43248 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC11O43248 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
HOXC11O43248 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXC11O43248 MTDHP1-201ENST00000605323 784 ntBASIC20.8■□□□□ 0.92
HOXC11O43248 MIR2861-201ENST00000636310 90 ntBASIC20.8■□□□□ 0.92
HOXC11O43248 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC11O43248 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC11O43248 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC11O43248 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXC11O43248 AL049796.1-201ENST00000565336 1766 ntBASIC20.8■□□□□ 0.92
HOXC11O43248 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
HOXC11O43248 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
HOXC11O43248 MIR718-201ENST00000390190 70 ntBASIC20.79■□□□□ 0.92
HOXC11O43248 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
HOXC11O43248 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXC11O43248 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC11O43248 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXC11O43248 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXC11O43248 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HOXC11O43248 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC11O43248 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HOXC11O43248 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXC11O43248 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
HOXC11O43248 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC11O43248 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXC11O43248 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXC11O43248 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXC11O43248 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms