Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 AC097381.1-201ENST00000429019 1296 ntBASIC21.25■□□□□ 0.99
DDX56Q9NY93 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 FAM21FP-204ENST00000608637 956 ntBASIC21.25■□□□□ 0.99
DDX56Q9NY93 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.25■□□□□ 0.99
DDX56Q9NY93 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX56Q9NY93 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX56Q9NY93 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX56Q9NY93 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
DDX56Q9NY93 KRT8P36-201ENST00000489121 1440 ntBASIC21.23■□□□□ 0.99
DDX56Q9NY93 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX56Q9NY93 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.23■□□□□ 0.99
DDX56Q9NY93 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.23■□□□□ 0.99
DDX56Q9NY93 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
DDX56Q9NY93 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX56Q9NY93 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 MIR6821-201ENST00000617625 74 ntBASIC21.22■□□□□ 0.99
DDX56Q9NY93 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX56Q9NY93 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.22■□□□□ 0.99
DDX56Q9NY93 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 AC099778.1-201ENST00000568593 1911 ntBASIC21.21■□□□□ 0.99
DDX56Q9NY93 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.21■□□□□ 0.99
DDX56Q9NY93 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX56Q9NY93 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms