Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP42Q9H9J4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP42Q9H9J4 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 TSPY15P-201ENST00000457163 923 ntBASIC26.1■■□□□ 1.77
USP42Q9H9J4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
USP42Q9H9J4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP42Q9H9J4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 AC116050.2-201ENST00000612102 1779 ntBASIC26.09■■□□□ 1.77
USP42Q9H9J4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 AC087633.2-202ENST00000565166 1439 ntBASIC26.09■■□□□ 1.77
USP42Q9H9J4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.09■■□□□ 1.77
USP42Q9H9J4 AC120498.8-201ENST00000614275 531 ntBASIC26.09■■□□□ 1.77
USP42Q9H9J4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP42Q9H9J4 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.08■■□□□ 1.77
USP42Q9H9J4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP42Q9H9J4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP42Q9H9J4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP42Q9H9J4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP42Q9H9J4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
USP42Q9H9J4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC26.08■■□□□ 1.77
USP42Q9H9J4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USP42Q9H9J4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
USP42Q9H9J4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC26.08■■□□□ 1.77
USP42Q9H9J4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP42Q9H9J4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
USP42Q9H9J4 AC113410.3-201ENST00000623366 203 ntBASIC26.08■■□□□ 1.77
USP42Q9H9J4 FBXW4P1-201ENST00000426721 2239 ntBASIC26.08■■□□□ 1.76
USP42Q9H9J4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 AC087499.1-201ENST00000418141 1075 ntBASIC26.07■■□□□ 1.76
USP42Q9H9J4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 SERP1-205ENST00000487153 657 ntTSL 4 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC26.07■■□□□ 1.76
USP42Q9H9J4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP42Q9H9J4 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 AC244015.2-201ENST00000616358 1861 ntBASIC26.06■■□□□ 1.76
USP42Q9H9J4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
USP42Q9H9J4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC26.06■■□□□ 1.76
USP42Q9H9J4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 MIR4785-201ENST00000585005 73 ntBASIC26.06■■□□□ 1.76
USP42Q9H9J4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
USP42Q9H9J4 AP001412.1-201ENST00000608405 714 ntBASIC26.06■■□□□ 1.76
USP42Q9H9J4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC26.06■■□□□ 1.76
USP42Q9H9J4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 AL135905.2-201ENST00000584934 1404 ntBASIC26.05■■□□□ 1.76
USP42Q9H9J4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC26.05■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms