Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 KRT18P68-201ENST00000392293 1000 ntBASIC20.27■□□□□ 0.84
VPS35Q96QK1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.27■□□□□ 0.83
VPS35Q96QK1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
VPS35Q96QK1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS35Q96QK1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VPS35Q96QK1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 AL121603.2-201ENST00000557373 2117 ntBASIC20.26■□□□□ 0.83
VPS35Q96QK1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 BX276092.2-201ENST00000417668 665 ntBASIC20.26■□□□□ 0.83
VPS35Q96QK1 AL355472.2-201ENST00000422958 438 ntBASIC20.26■□□□□ 0.83
VPS35Q96QK1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 AC092118.2-201ENST00000613495 667 ntBASIC20.26■□□□□ 0.83
VPS35Q96QK1 AL589743.5-201ENST00000616611 1050 ntBASIC20.26■□□□□ 0.83
VPS35Q96QK1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS35Q96QK1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS35Q96QK1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 MIR4758-201ENST00000577688 71 ntBASIC20.25■□□□□ 0.83
VPS35Q96QK1 AC105020.6-201ENST00000621523 1217 ntBASIC20.25■□□□□ 0.83
VPS35Q96QK1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VPS35Q96QK1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS35Q96QK1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS35Q96QK1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 KRT17P1-201ENST00000399211 1546 ntBASIC20.24■□□□□ 0.83
VPS35Q96QK1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS35Q96QK1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS35Q96QK1 AC073210.2-201ENST00000430369 194 ntBASIC20.24■□□□□ 0.83
VPS35Q96QK1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS35Q96QK1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 AL356652.1-201ENST00000615962 565 ntBASIC20.24■□□□□ 0.83
VPS35Q96QK1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS35Q96QK1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS35Q96QK1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
VPS35Q96QK1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS35Q96QK1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS35Q96QK1 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 LSM12P1-201ENST00000411836 588 ntBASIC20.23■□□□□ 0.83
VPS35Q96QK1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 AL138781.1-201ENST00000566567 1274 ntBASIC20.23■□□□□ 0.83
VPS35Q96QK1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS35Q96QK1 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS35Q96QK1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS35Q96QK1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS35Q96QK1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS35Q96QK1 RNF165-205ENST00000588679 2904 ntBASIC20.23■□□□□ 0.83
VPS35Q96QK1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms